fastcodeml

fastcodeml

Optimization strategies for fast detection of positive selection on phylogenetic trees

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extra_install_doc Loading commit data...
simpleopt Loading commit data...
.clang-format Loading commit data...
.gitignore Loading commit data...
AUTHORS Loading commit data...
AlignedAllocator.cpp Loading commit data...
AlignedAllocator.h Loading commit data...
AlignedMalloc.h Loading commit data...
BUGS Loading commit data...
BayesTest.cpp Loading commit data...
BayesTest.h Loading commit data...
BranchSiteModel.cpp Loading commit data...
BranchSiteModel.h Loading commit data...
CHANGELOG Loading commit data...
CMakeLists.txt Loading commit data...
CmdLine.cpp Loading commit data...
CmdLine.h Loading commit data...
CodeMLoptimizer.cpp Loading commit data...
CodeMLoptimizer.h Loading commit data...
CodonFrequencies.cpp Loading commit data...
CodonFrequencies.h Loading commit data...
CompilerHints.h Loading commit data...
DAGScheduler.cpp Loading commit data...
DAGScheduler.h Loading commit data...
Doxyfile Loading commit data...
ENSGT00390000016702.Primates.01.002.nwk Loading commit data...
ENSGT00390000016702.Primates.01.002_rooted.nwk Loading commit data...
ENSGT00390000016702.Primates.01.002_unrooted.nwk Loading commit data...
ENSGT00390000016702.Primates.01.phy Loading commit data...
Exceptions.h Loading commit data...
FatVectorTransform.cpp Loading commit data...
FatVectorTransform.h Loading commit data...
FillMatrix.cpp Loading commit data...
Forest.cpp Loading commit data...
Forest.h Loading commit data...
ForestExport.cpp Loading commit data...
ForestExport.h Loading commit data...
ForestNode.h Loading commit data...
Genes.cpp Loading commit data...
Genes.h Loading commit data...
HighLevelCoordinator.cpp Loading commit data...
HighLevelCoordinator.h Loading commit data...
INSTALL Loading commit data...
LICENSE Loading commit data...
MathSupport.h Loading commit data...
MatrixSize.h Loading commit data...
Newick.cpp Loading commit data...
Newick.h Loading commit data...
NewickGrammar.h Loading commit data...
ParseParameters.cpp Loading commit data...
ParseParameters.h Loading commit data...
Phylip.cpp Loading commit data...
Phylip.h Loading commit data...
PhyloTree.cpp Loading commit data...
PhyloTree.h Loading commit data...
ProbabilityMatrixSet.cpp Loading commit data...
ProbabilityMatrixSet.h Loading commit data...
README Loading commit data...
SETPATHS Loading commit data...
THANKS Loading commit data...
TODO Loading commit data...
Timer.h Loading commit data...
TransitionMatrix.cpp Loading commit data...
TransitionMatrix.h Loading commit data...
TreeAndSetsDependencies.cpp Loading commit data...
TreeAndSetsDependencies.h Loading commit data...
TreeNode.cpp Loading commit data...
TreeNode.h Loading commit data...
Types.h Loading commit data...
VerbosityLevels.cpp Loading commit data...
VerbosityLevels.h Loading commit data...
WriteResults.cpp Loading commit data...
WriteResults.h Loading commit data...
blas.h Loading commit data...
clean.sh Loading commit data...
create_tarball.sh Loading commit data...
fast.cpp Loading commit data...
fast.supp Loading commit data...
fastcodeml.git.kdev4 Loading commit data...
format.sh Loading commit data...
genQ.r Loading commit data...
lapack.h Loading commit data...
nlopt.h Loading commit data...
nlopt.hpp Loading commit data...